STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43380.1Pfam:pfam00069 Protein kinase domain. (360 aa)    
Predicted Functional Partners:
AMS42542.1
Pfam:pfam00481 Protein phosphatase 2C.
 
 
 0.888
AMS43379.1
Pfam:pfam11215 Protein of unknown function (DUF3010).
       0.707
AMS42531.1
Type VI secretion protein; Pfam:pfam09867 Uncharacterized protein conserved in bacteria (DUF2094).
  
  
 0.517
AMS40522.1
PAS/PAC sensor hybrid histidine kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 
 0.480
AMS41804.1
Hypothetical protein.
  
 
 0.480
AMS44355.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
  
  
 0.464
AMS42538.1
Type IV secretion protein Rhs; Pfam:pfam05954 Phage late control gene D protein (GPD).
 
  
 0.433
xseA
Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
 
     0.423
AMS42529.1
Membrane protein; Pfam:pfam09850 Uncharacterized protein conserved in bacteria (DUF2077).
  
  
 0.421
AMS42540.1
Type IV / vi secretion system protein, dotu family; Pfam:pfam09850 Uncharacterized protein conserved in bacteria (DUF2077).
  
  
 0.421
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.