STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43459.1Oxidoreductase; Pfam:pfam00106 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (248 aa)    
Predicted Functional Partners:
AMS43633.1
Short-chain dehydrogenase; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
  
     0.744
AMS42570.1
Short-chain dehydrogenase; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
  
     0.650
AMS43458.1
Membrane protein.
   
   0.530
AMS43496.1
Oxidoreductase, short chain dehydrogenase/reductase family; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
 
  
 0.487
AMS43460.1
Permease; Pfam:pfam02080 TrkA-C domain.
     
 0.469
uvrA
Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
   
  
 0.445
AMS39848.1
Oxidoreductase; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
  
     0.438
AMS42783.1
CheY-like receiver domain-containing protein; Pfam:pfam00072 Response regulator receiver domain.
  
 
   0.436
AMS40963.1
PTS galactitol transporter subunit IIC; Pfam:pfam03611 PTS system sugar-specific permease component.
  
    0.428
AMS43446.1
ACP S-malonyltransferase; Pfam:pfam00698 Acyl transferase domain.
  
 
 0.425
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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