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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43469.1Pfam:pfam00005 ABC transporter. (632 aa)    
Predicted Functional Partners:
AMS43470.1
ArsR family transcriptional regulator; Pfam:pfam12840 Helix-turn-helix domain.
       0.782
AMS43471.1
Peptigoglycan-binding protein LysM; Pfam:pfam01476 LysM domain.
       0.623
AMS40724.1
Hypothetical protein.
  
     0.598
AMS41749.1
Photosynthetic protein synthase I; Pfam:pfam02630 SCO1/SenC.
  
     0.577
AMS40362.1
Pfam:pfam00005 ABC transporter.
  
 
0.555
AMS41331.1
ATP-binding cassette sub-family B member 6, mitochondrial-like; Pfam:pfam00005 ABC transporter.
  
 
0.553
AMS41330.1
Multidrug ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
  
 
0.552
AMS39637.1
Hypothetical protein; Pfam:pfam00005 ABC transporter.
  
 
0.543
ndvA
Cyclic beta-1,2-glucan ABC transporter; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
0.540
AMS44325.1
Pfam:pfam00005 ABC transporter.
  
 
0.535
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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