STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43471.1Peptigoglycan-binding protein LysM; Pfam:pfam01476 LysM domain. (487 aa)    
Predicted Functional Partners:
AMS44255.1
Hypothetical protein; Pfam:pfam07411 Domain of unknown function (DUF1508).
  
   0.897
AMS43408.1
Hypothetical protein; Pfam:pfam03724 META domain.
 
    0.720
AMS42261.1
Pfam:pfam05036 Sporulation related domain.
  
    0.712
AMS43470.1
ArsR family transcriptional regulator; Pfam:pfam12840 Helix-turn-helix domain.
     
 0.627
AMS43469.1
Pfam:pfam00005 ABC transporter.
       0.623
AMS43472.1
Pfam:pfam03641 Possible lysine decarboxylase; Belongs to the LOG family.
       0.606
wrbA_2
NAD(P)H quinone oxidoreductase; Pfam:pfam03358 NADPH-dependent FMN reductase.
  
  
 0.558
AMS42710.1
Cell division protein; Pfam:pfam04977 Septum formation initiator.
 
     0.551
AMS40828.1
DNA starvation/stationary phase protection protein Dps; Pfam:pfam00210 Ferritin-like domain; Belongs to the Dps family.
   
  
 0.502
AMS40879.1
Pfam:pfam03358 NADPH-dependent FMN reductase.
   
  
 0.498
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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