STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43484.1Hypothetical protein; Pfam:pfam02586 Uncharacterized ACR, COG2135; Belongs to the SOS response-associated peptidase family. (258 aa)    
Predicted Functional Partners:
AMS43485.1
Hypothetical protein; Pfam:pfam00293 NUDIX domain; Belongs to the Nudix hydrolase family.
 
     0.673
AMS43483.1
Amino acid transporter LysE; Pfam:pfam01810 LysE type translocator.
       0.568
AMS39300.1
Site-specific recombinase XerD; Pfam:pfam00589 Phage integrase family; Belongs to the 'phage' integrase family.
   
    0.417
AMS39345.1
Site-specific recombinase XerD; Pfam:pfam00589 Phage integrase family; Belongs to the 'phage' integrase family.
   
    0.417
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.417
AMS40510.1
Integrase family protein.
   
    0.417
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.417
AMS41416.1
Hypothetical protein.
   
    0.417
AMS43554.1
Integrase; Pfam:pfam00589 Phage integrase family.
   
    0.417
AMS43886.1
Hypothetical protein; Pfam:pfam00589 Phage integrase family.
   
    0.417
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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