STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43494.1Pfam:pfam13316 Protein of unknown function (DUF4087). (129 aa)    
Predicted Functional Partners:
AMS42818.1
Pfam:pfam13673 Acetyltransferase (GNAT) domain.
  
     0.663
AMS41516.1
Pfam:pfam11924 Protein of unknown function (DUF3442).
  
     0.653
AMS43407.1
Pfam:pfam15580 Immunity protein 33.
  
     0.595
AMS40707.1
Pfam:pfam05045 Rhamnan synthesis protein F.
  
     0.567
AMS43493.1
Hypothetical protein; Pfam:pfam06772 Bacterial low temperature requirement A protein (LtrA).
       0.539
AMS43495.1
Pfam:pfam11746 Protein of unknown function (DUF3303).
       0.531
AMS43497.1
ATPase; Pfam:pfam08327 Activator of Hsp90 ATPase-like protein.
 
     0.508
AMS41814.1
Pfam:pfam00440 Bacterial regulatory proteins, tetR family.
  
     0.493
AMS39724.1
Hypothetical protein.
  
     0.491
AMS42632.1
Pfam:pfam07886 BA14K-like protein.
  
     0.483
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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