STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43582.1XRE family transcriptional regulator. (244 aa)    
Predicted Functional Partners:
AMS43581.1
Membrane protein.
 
     0.887
AMS40803.1
Isomerase; Pfam:pfam12680 SnoaL-like domain.
 
     0.763
AMS40645.1
Hypothetical protein.
 
     0.758
AMS40404.1
Hypothetical protein.
 
     0.754
AMS39469.1
Pfam:pfam06441 Epoxide hydrolase N terminus.
  
    0.524
AMS41976.1
AraC family transcriptional regulator; Pfam:pfam12833 Helix-turn-helix domain.
  
    0.482
AMS41975.1
Glyoxalase; Pfam:pfam12681 Glyoxalase-like domain.
  
    0.466
AMS39978.1
EcaC; Pfam:pfam14534 Domain of unknown function (DUF4440).
  
     0.418
AMS41535.1
Glyoxalase; Pfam:pfam12681 Glyoxalase-like domain.
  
    0.409
AMS39067.1
Cupin; Pfam:pfam12852 Cupin.
  
    0.406
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.