Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
AMS43598.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
AMS43599.1
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   
 0.736
AMS43597.1
Cytochrome C.
 
     0.724
AMS43595.1
Heme lyase subunit CcmF; Pfam:pfam01578 Cytochrome C assembly protein.
       0.641
ccmE
Cytochrome C biogenesis protein CcdA; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
       0.634
AMS43594.1
Cytochrome C; Possible subunit of a heme lyase.
       0.605
AMS40329.1
TolA, TolA protein.
  
     0.604
AMS41768.1
Pfam:pfam13502 AsmA-like C-terminal region.
  
     0.485
AMS43486.1
Pfam:pfam09539 Protein of unknown function (DUF2385).
 
     0.480
lptD
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.479
AMS44078.1
Hypothetical protein; Pfam:pfam13502 AsmA-like C-terminal region.
  
     0.473
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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