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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43627.1Hypothetical protein; Pfam:pfam03734 L,D-transpeptidase catalytic domain. (246 aa)    
Predicted Functional Partners:
AMS42358.1
Hypothetical protein; Pfam:pfam05128 Domain of unknown function (DUF697).
  
     0.687
AMS42326.1
Hypothetical protein.
  
     0.620
AMS43742.1
ErfK/YbiS/YcfS/YnhG family protein; Pfam:pfam03734 L,D-transpeptidase catalytic domain.
 
  
 0.619
AMS39634.1
Hypothetical protein; Pfam:pfam03411 Penicillin-insensitive murein endopeptidase.
  
     0.617
AMS40974.1
Pfam:pfam05951 Bacterial protein of unknown function (DUF882).
 
     0.596
AMS43749.1
Pfam:pfam06776 Invasion associated locus B (IalB) protein.
  
     0.594
AMS40631.1
Hypothetical protein.
 
  
 0.574
AMS42359.1
ATP/GTP-binding protein; Pfam:pfam04317 YcjX-like family, DUF463.
  
     0.567
AMS41471.1
Pfam:pfam01464 Transglycosylase SLT domain.
 
     0.540
AMS39687.1
Pfam:pfam11014 Protein of unknown function (DUF2852).
  
     0.531
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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