STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43718.1Disulfide bond formation protein DsbD; Pfam:pfam13462 Thioredoxin. (247 aa)    
Predicted Functional Partners:
smc
Hypothetical protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
  
 0.678
AMS42231.1
Pfam:pfam01323 DSBA-like thioredoxin domain.
 
   
 0.669
AMS43719.1
Pfam:pfam05258 Protein of unknown function (DUF721).
 
     0.650
AMS40702.1
Membrane protein; Pfam:pfam02600 Disulfide bond formation protein DsbB.
 
 
 0.628
AMS43131.1
DSBA oxidoreductase; Pfam:pfam13462 Thioredoxin.
 
   
 0.621
AMS43539.1
Pfam:pfam00717 Peptidase S24-like; Belongs to the peptidase S26 family.
  
   
 0.571
AMS41732.1
Pfam:pfam01098 Cell cycle protein; Belongs to the SEDS family.
 
  
 0.512
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.511
AMS40684.1
Redoxin; Pfam:pfam13905 Thioredoxin-like.
 
 
 0.497
AMS38979.1
Cro/Cl family transcriptional regulator; Pfam:pfam01381 Helix-turn-helix.
  
     0.481
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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