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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43722.1Pfam:pfam01555 DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family. (377 aa)    
Predicted Functional Partners:
AMS44215.1
Pfam:pfam07750 GcrA cell cycle regulator.
 
   
 0.681
atpF
F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
 
     0.623
AMS40643.1
Cobalt chelatase; Pfam:pfam06213 Cobalamin biosynthesis protein CobT.
 
     0.585
AMS43723.1
HAD family hydrolase; Pfam:pfam13419 Haloacid dehalogenase-like hydrolase.
       0.556
lexA
umuDC operon protein-like protein; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
 0.555
AMS40701.1
MFS transporter; Pfam:pfam01844 HNH endonuclease.
 
  
 0.522
parC
DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
 
   
 0.506
AMS43293.1
DNA methyltransferase; Pfam:pfam02086 D12 class N6 adenine-specific DNA methyltransferase.
 
  
 0.499
AMS40642.1
Pfam:pfam12556 Cobaltochelatase CobS subunit N terminal.
 
    0.484
AMS43724.1
Hypothetical protein; Pfam:pfam00534 Glycosyl transferases group 1.
       0.484
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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