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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43787.1Tetratricopeptide TPR_1 repeat-containing protein; Pfam:pfam13414 TPR repeat. (667 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.884
AMS40243.1
Membrane protein; Pfam:pfam01551 Peptidase family M23.
 
 
 
 0.642
AMS40739.1
Hypothetical protein; Pfam:pfam13763 Domain of unknown function (DUF4167).
 
     0.610
AMS40554.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   
 0.568
AMS40872.1
GlcNAc transferase; Pfam:pfam13414 TPR repeat.
 
   
 0.565
glyQ
Pfam:pfam02091 Glycyl-tRNA synthetase alpha subunit.
  
    0.565
AMS43788.1
Pfam:pfam00348 Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.560
AMS43790.1
Hypothetical protein; Pfam:pfam05175 Methyltransferase small domain; Belongs to the methyltransferase superfamily.
 
     0.544
AMS41313.1
Pfam:pfam01882 Protein of unknown function DUF58.
 
   
 0.534
AMS40680.1
Hypothetical protein; Pfam:pfam13779 Domain of unknown function (DUF4175).
  
   
 0.526
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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