STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43806.1Membrane protein; Pfam:pfam09976 Tetratricopeptide repeat. (221 aa)    
Predicted Functional Partners:
der
GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
     0.832
AMS42959.1
Metal-binding protein; Pfam:pfam02620 Uncharacterized ACR, COG1399.
  
    0.742
AMS39697.1
LuxR family transcriptional regulator; Pfam:pfam12705 PD-(D/E)XK nuclease superfamily.
  
     0.678
AMS42261.1
Pfam:pfam05036 Sporulation related domain.
  
     0.641
AMS41248.1
Histidine phosphotransferase; Pfam:pfam10090 Uncharacterized protein conserved in bacteria (DUF2328).
  
     0.638
AMS43719.1
Pfam:pfam05258 Protein of unknown function (DUF721).
  
     0.627
AMS42961.1
SmpA/OmlA domain-containing protein; Pfam:pfam04355 SmpA / OmlA family.
  
   
 0.613
lptD
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.603
atpF
F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
 
   
 0.595
AMS39749.1
Hypothetical protein; Pfam:pfam06144 DNA polymerase III, delta subunit.
  
     0.582
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.