STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43827.1Pfam:pfam00202 Aminotransferase class-III. (1016 aa)    
Predicted Functional Partners:
AMS43828.1
AsnC family transcriptional regulator; Pfam:pfam13412 Winged helix-turn-helix DNA-binding.
 
   
 0.674
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.614
nadE-2
Hypothetical protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.614
AMS39462.1
Malic enzyme; Pfam:pfam01515 Phosphate acetyl/butaryl transferase.
  
  
 0.591
AMS42802.1
Malic enzyme; Pfam:pfam01515 Phosphate acetyl/butaryl transferase.
  
  
 0.591
AMS44197.1
Histidine kinase; Pfam:pfam12860 PAS fold.
  
 
 0.587
AMS40735.1
Pfam:pfam00696 Amino acid kinase family; Belongs to the aspartokinase family.
  
  
 0.556
AMS43826.1
Amino acid ABC transporter substrate-binding protein; Pfam:pfam00497 Bacterial extracellular solute-binding proteins, family 3.
  
  
 0.555
AMS40727.1
Amidohydrolase; Pfam:pfam00795 Carbon-nitrogen hydrolase.
  
  
 0.544
AMS40725.1
Amidophosphoribosyltransferase; Pfam:pfam00156 Phosphoribosyl transferase domain.
  
    0.543
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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