STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43830.1Arabinose efflux permease; Pfam:pfam07690 Major Facilitator Superfamily. (472 aa)    
Predicted Functional Partners:
AMS43829.1
Hypothetical protein; Pfam:pfam07859 alpha/beta hydrolase fold.
  
 
 0.732
AMS42548.1
Hypothetical protein; Pfam:pfam07690 Major Facilitator Superfamily.
  
  
 0.703
AMS43843.1
MFS transporter; Pfam:pfam07690 Major Facilitator Superfamily.
  
   
 0.686
AMS41773.1
Pfam:pfam07690 Major Facilitator Superfamily.
  
  
 0.600
AMS43831.1
Transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
  
    0.564
AMS39659.1
MFS transporter; Pfam:pfam07690 Major Facilitator Superfamily.
  
  
 0.541
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. Belongs to the polypeptide deformylase family.
   
   0.507
AMS43511.1
Hypothetical protein; Pfam:pfam07690 Major Facilitator Superfamily.
  
  
 0.456
AMS42833.1
Pfam:pfam07690 Major Facilitator Superfamily.
  
  
 0.433
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.