STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43837.1Methionine ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter. (276 aa)    
Predicted Functional Partners:
AMS43838.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
  0.994
AMS43839.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   0.904
AMS43836.1
Pfam:pfam00005 ABC transporter.
 
  
0.868
AMS43840.1
Hypothetical protein; Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle.
  
    0.782
AMS43834.1
Cobalamin biosynthesis protein CobW; Pfam:pfam02492 CobW/HypB/UreG, nucleotide-binding domain.
       0.773
AMS43835.1
Hypothetical protein; Pfam:pfam07969 Amidohydrolase family.
       0.773
AMS39282.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
    0.744
AMS43280.1
Permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
    0.741
AMS44259.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
    0.740
AMS39597.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
    0.731
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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