STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43852.12-dehydro-3-deoxygalactonokinase; Pfam:pfam05035 2-keto-3-deoxy-galactonokinase. (312 aa)    
Predicted Functional Partners:
AMS43851.1
Pfam:pfam01081 KDPG and KHG aldolase.
 
  
 0.995
AMS39651.1
Hypothetical protein; Pfam:pfam01081 KDPG and KHG aldolase.
 
  
 0.979
AMS43859.1
Galactonate dehydratase; Pfam:pfam13378 Enolase C-terminal domain-like.
 
 
 0.970
AMS41418.1
Isomerase; Pfam:pfam13378 Enolase C-terminal domain-like; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.941
AMS43850.1
Gluconolaconase; Pfam:pfam08450 SMP-30/Gluconolaconase/LRE-like region.
 
   
 0.913
AMS39652.1
Hypothetical protein; Pfam:pfam05035 2-keto-3-deoxy-galactonokinase.
  
  
 
0.903
AMS43854.1
Pfam:pfam01263 Aldose 1-epimerase.
 
     0.843
AMS43855.1
Arabinose ABC transporter permease; Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.780
AMS43853.1
Pfam:pfam00106 short chain dehydrogenase.
       0.773
araG
Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
       0.768
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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