STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43854.1Pfam:pfam01263 Aldose 1-epimerase. (292 aa)    
Predicted Functional Partners:
glk
Glucokinase; Pfam:pfam02685 Glucokinase; Belongs to the bacterial glucokinase family.
    
 0.910
AMS42660.1
Hypothetical protein; Pfam:pfam00480 ROK family.
    
 0.908
AMS39653.1
3-oxoacyl-ACP reductase; Pfam:pfam00106 short chain dehydrogenase.
  
 
 0.903
AMS41064.1
Hypothetical protein; Converts alpha-aldose to the beta-anomer.
     
  0.900
AMS43851.1
Pfam:pfam01081 KDPG and KHG aldolase.
 
   
 0.848
AMS43852.1
2-dehydro-3-deoxygalactonokinase; Pfam:pfam05035 2-keto-3-deoxy-galactonokinase.
 
     0.843
AMS43853.1
Pfam:pfam00106 short chain dehydrogenase.
 
  
 0.832
AMS43855.1
Arabinose ABC transporter permease; Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.828
AMS43857.1
Sugar ABC transporter substrate-binding protein; Pfam:pfam00532 Periplasmic binding proteins and sugar binding domain of LacI family.
 
     0.821
AMS43850.1
Gluconolaconase; Pfam:pfam08450 SMP-30/Gluconolaconase/LRE-like region.
     
 0.799
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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