STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AMS43872.1Putative GTPase, G3E family; Pfam:pfam02492 CobW/HypB/UreG, nucleotide-binding domain. (373 aa)    
Predicted Functional Partners:
AMS43873.1
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein; Pfam:pfam02738 Molybdopterin-binding domain of aldehyde dehydrogenase.
       0.773
AMS43874.1
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein; Pfam:pfam01799 [2Fe-2S] binding domain.
       0.773
AMS43875.1
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.
       0.773
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.618
dksA
Molecular chaperone DnaK; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.530
AMS43876.1
Pfam:pfam00860 Permease family.
       0.517
rpmB
Pfam:pfam00830 Ribosomal L28 family; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.502
rpmG
Pfam:pfam00471 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.490
AMS39245.1
Iron ABC transporter substrate-binding protein; Pfam:pfam01297 Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.483
AMS43083.1
Metal ABC transporter substrate-binding protein; Pfam:pfam01297 Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.483
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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