STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43889.1Hypothetical protein; Pfam:pfam00005 ABC transporter. (98 aa)    
Predicted Functional Partners:
AMS43942.1
Membrane protein; Pfam:pfam12679 ABC-2 family transporter protein.
  
 
 0.737
AMS41694.1
Pfam:pfam01061 ABC-2 type transporter.
 
  
 0.627
AMS43888.1
Pfam:pfam00589 Phage integrase family.
     
 0.617
AMS43946.1
Putative NosR; Pfam:pfam04205 FMN-binding domain.
  
  
 0.571
atpC
F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.563
AMS39027.1
Mannose-1-phosphate guanyltransferase; Pfam:pfam01061 ABC-2 type transporter.
  
  
 0.550
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
 
 0.520
AMS43887.1
Cell division protein Fic; Pfam:pfam02661 Fic/DOC family.
  
    0.441
AMS39637.1
Hypothetical protein; Pfam:pfam00005 ABC transporter.
  
 0.438
AMS40362.1
Pfam:pfam00005 ABC transporter.
  
 0.438
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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