STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43915.1Transposase; Pfam:pfam00665 Integrase core domain. (422 aa)    
Predicted Functional Partners:
AMS43914.1
ATPase AAA; Pfam:pfam01695 IstB-like ATP binding protein.
 
  
 0.914
AMS43916.1
Mobile element protein; Pfam:pfam01548 Transposase.
 
   
 0.615
AMS39316.1
Transposase; Pfam:pfam03050 Transposase IS66 family.
 
     0.545
AMS44013.1
Hypothetical protein; Pfam:pfam03050 Transposase IS66 family.
 
     0.533
AMS39318.1
Isocitrate lyase; Pfam:pfam05717 IS66 Orf2 like protein.
 
     0.498
AMS44014.1
Transposase; Pfam:pfam05717 IS66 Orf2 like protein.
 
     0.489
AMS39317.1
Transposase IS66; Pfam:pfam13005 zinc-finger binding domain of transposase IS66.
 
     0.470
AMS39304.1
Transposase; Pfam:pfam02371 Transposase IS116/IS110/IS902 family.
 
   
 0.400
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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