STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43917.1RNA polymerase sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. (229 aa)    
Predicted Functional Partners:
AMS43918.1
Membrane protein; Pfam:pfam13628 Domain of unknown function (DUF4142).
 
     0.771
AMS43919.1
Amicyanin; Pfam:pfam13473 Cupredoxin-like domain.
 
     0.672
AMS41324.1
RNA polymerase sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.636
sigK_2
RNA polymerase sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.566
AMS43502.1
Anti-sigma factor.
  
 
 0.468
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.429
AMS39115.1
Anti-FecI sigma factor, FecR; Pfam:pfam04773 FecR protein.
  
 
 0.418
AMS43731.1
Peptidase M16; Pfam:pfam00675 Insulinase (Peptidase family M16); Belongs to the peptidase M16 family.
 
    0.414
AMS42151.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.412
AMS39261.1
Anti-sigma factor.
  
 
 0.406
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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