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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43922.1Pfam:pfam00027 Cyclic nucleotide-binding domain. (234 aa)    
Predicted Functional Partners:
AMS44303.1
Transcriptional regulator, LuxR family; Pfam:pfam12697 Alpha/beta hydrolase family.
  
 0.815
AMS43956.1
Nitrite reductase, copper-containing; Pfam:pfam00394 Multicopper oxidase; Belongs to the multicopper oxidase family.
 
   
 0.748
AMS43950.1
Pseudoazurin; Pfam:pfam00127 Copper binding proteins, plastocyanin/azurin family.
 
   
 0.724
AMS43955.1
Hypothetical protein; Pfam:pfam03781 Sulfatase-modifying factor enzyme 1.
 
     0.594
AMS43972.1
Nitric oxide reductase; Pfam:pfam00115 Cytochrome C and Quinol oxidase polypeptide I.
 
  
 0.554
AMS40554.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.530
AMS43973.1
Pfam:pfam00034 Cytochrome c.
 
  
 0.524
aqpZ
Porin; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.466
AMS40637.1
MIP family channel protein; Pfam:pfam00230 Major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.466
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.462
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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