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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43931.1Superfamily I DNA and RNA helicases and helicasesubunits-like protein. (300 aa)    
Predicted Functional Partners:
leuS
Pfam:pfam13603 Leucyl-tRNA synthetase, Domain 2; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.572
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
 
 0.539
AMS40139.1
Putative DNA/RNA helicase, superfamily I; Pfam:pfam00580 UvrD/REP helicase N-terminal domain.
  
  
 0.535
AMS41424.1
Hypothetical protein; Pfam:pfam14067 LssY C-terminus.
  
  
 0.535
AMS41760.1
ATP-dependent DNA helicase; Pfam:pfam00580 UvrD/REP helicase N-terminal domain.
  
  
 0.535
AMS43307.1
ATP-dependent DNA helicase; Pfam:pfam00580 UvrD/REP helicase N-terminal domain.
  
  
 0.535
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.527
AMS40192.1
MFS transporter; Pfam:pfam01189 NOL1/NOP2/sun family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
    0.516
AMS43932.1
Hypothetical protein; Pfam:pfam00392 Bacterial regulatory proteins, gntR family.
       0.516
AMS44042.1
MFS transporter; Pfam:pfam01189 NOL1/NOP2/sun family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
    0.516
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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