Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ybdM | ybdR | b0601 | b0608 | Spo0J family protein, ParB-like nuclease domain. | Putative oxidoreductase. | 0.787 |
ybdR | ybdM | b0608 | b0601 | Putative oxidoreductase. | Spo0J family protein, ParB-like nuclease domain. | 0.787 |
ybdR | ybfC | b0608 | b0704 | Putative oxidoreductase. | Uncharacterized protein YbfC; Pseudogene, Rhs family. | 0.809 |
ybdR | ycaP | b0608 | b0906 | Putative oxidoreductase. | UPF0702 family putative inner membrane protein. | 0.685 |
ybdR | yciF | b0608 | b1258 | Putative oxidoreductase. | Putative structural proteins. | 0.607 |
ybdR | ycjQ | b0608 | b1313 | Putative oxidoreductase. | Putative Zn-dependent NAD(P)-binding oxidoreductase; Catalyzes the NAD(+)-dependent oxidation of the hydroxyl group at C3 of D-gulosides leading to 3-dehydro-D-gulosides. Probably functions in a metabolic pathway that transforms D-gulosides to D- glucosides. Is also able to catalyze the reverse reactions, i.e. the NADH-dependent reduction of the oxo group at C3 of 3-dehydro-D- gulosides leading to D-gulosides. In vitro, can oxidize D-gulose and methyl beta-D-guloside, and reduce methyl alpha-3-dehydro-D-guloside and methyl beta-3-dehydro-D-guloside. However, the actual specific physiol [...] | 0.707 |
ybdR | ycjS | b0608 | b1315 | Putative oxidoreductase. | Putative NADH-binding oxidoreductase; Catalyzes the NADH-dependent reduction of the oxo group at C3 of 3-dehydro-D-glucosides leading to D-glucosides. Probably functions in a metabolic pathway that transforms D-gulosides to D-glucosides. Can use 3-dehydro-D-glucose, methyl alpha-3-dehydro-D-glucoside and methyl beta-3-dehydro-D-glucoside as substrates in vitro. However, the actual specific physiological substrates for this metabolic pathway are unknown. To a lesser extent, is also able to catalyze the reverse reactions, i.e. the NAD(+)-dependent oxidation of the hydroxyl group at C3 of [...] | 0.608 |
ybdR | ygfF | b0608 | b2902 | Putative oxidoreductase. | Putative oxidoreductase. | 0.624 |
ybdR | yggP | b0608 | b4465 | Putative oxidoreductase. | Putative Zn-binding dehydrogenase; To K.pneumoniae SorE. | 0.595 |
ybdR | yghA | b0608 | b3003 | Putative oxidoreductase. | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.887 |
ybdR | yohF | b0608 | b2137 | Putative oxidoreductase. | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.711 |
ybfC | ybdR | b0704 | b0608 | Uncharacterized protein YbfC; Pseudogene, Rhs family. | Putative oxidoreductase. | 0.809 |
ycaP | ybdR | b0906 | b0608 | UPF0702 family putative inner membrane protein. | Putative oxidoreductase. | 0.685 |
ycaP | yciF | b0906 | b1258 | UPF0702 family putative inner membrane protein. | Putative structural proteins. | 0.709 |
ycaP | yghA | b0906 | b3003 | UPF0702 family putative inner membrane protein. | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.592 |
yciF | ybdR | b1258 | b0608 | Putative structural proteins. | Putative oxidoreductase. | 0.607 |
yciF | ycaP | b1258 | b0906 | Putative structural proteins. | UPF0702 family putative inner membrane protein. | 0.709 |
yciF | yghA | b1258 | b3003 | Putative structural proteins. | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.674 |
ycjQ | ybdR | b1313 | b0608 | Putative Zn-dependent NAD(P)-binding oxidoreductase; Catalyzes the NAD(+)-dependent oxidation of the hydroxyl group at C3 of D-gulosides leading to 3-dehydro-D-gulosides. Probably functions in a metabolic pathway that transforms D-gulosides to D- glucosides. Is also able to catalyze the reverse reactions, i.e. the NADH-dependent reduction of the oxo group at C3 of 3-dehydro-D- gulosides leading to D-gulosides. In vitro, can oxidize D-gulose and methyl beta-D-guloside, and reduce methyl alpha-3-dehydro-D-guloside and methyl beta-3-dehydro-D-guloside. However, the actual specific physiol [...] | Putative oxidoreductase. | 0.707 |
ycjQ | ycjS | b1313 | b1315 | Putative Zn-dependent NAD(P)-binding oxidoreductase; Catalyzes the NAD(+)-dependent oxidation of the hydroxyl group at C3 of D-gulosides leading to 3-dehydro-D-gulosides. Probably functions in a metabolic pathway that transforms D-gulosides to D- glucosides. Is also able to catalyze the reverse reactions, i.e. the NADH-dependent reduction of the oxo group at C3 of 3-dehydro-D- gulosides leading to D-gulosides. In vitro, can oxidize D-gulose and methyl beta-D-guloside, and reduce methyl alpha-3-dehydro-D-guloside and methyl beta-3-dehydro-D-guloside. However, the actual specific physiol [...] | Putative NADH-binding oxidoreductase; Catalyzes the NADH-dependent reduction of the oxo group at C3 of 3-dehydro-D-glucosides leading to D-glucosides. Probably functions in a metabolic pathway that transforms D-gulosides to D-glucosides. Can use 3-dehydro-D-glucose, methyl alpha-3-dehydro-D-glucoside and methyl beta-3-dehydro-D-glucoside as substrates in vitro. However, the actual specific physiological substrates for this metabolic pathway are unknown. To a lesser extent, is also able to catalyze the reverse reactions, i.e. the NAD(+)-dependent oxidation of the hydroxyl group at C3 of [...] | 0.992 |
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