Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
blc | yfeY | b4149 | b2432 | Outer membrane lipoprotein cell division and growth lipocalin; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids; Belongs to the calycin superfamily. Lipocalin family. | RpoE-regulated lipoprotein. | 0.456 |
sixA | yaiW | b2340 | b0378 | Phosphohistidine phosphatase; Exhibits phosphohistidine phosphatase activity towards the HPt domain of the ArcB sensor involved in the multistep His-Asp phosphorelay. | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | 0.408 |
sixA | yfeY | b2340 | b2432 | Phosphohistidine phosphatase; Exhibits phosphohistidine phosphatase activity towards the HPt domain of the ArcB sensor involved in the multistep His-Asp phosphorelay. | RpoE-regulated lipoprotein. | 0.481 |
yaiW | sixA | b0378 | b2340 | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | Phosphohistidine phosphatase; Exhibits phosphohistidine phosphatase activity towards the HPt domain of the ArcB sensor involved in the multistep His-Asp phosphorelay. | 0.408 |
yaiW | yfeK | b0378 | b2419 | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | Uncharacterized protein. | 0.630 |
yaiW | yfeY | b0378 | b2432 | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | RpoE-regulated lipoprotein. | 0.540 |
yaiW | yiiS | b0378 | b3922 | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | UPF0381 family protein; Belongs to the UPF0381 family. | 0.501 |
yfeK | yaiW | b2419 | b0378 | Uncharacterized protein. | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | 0.630 |
yfeK | yfeY | b2419 | b2432 | Uncharacterized protein. | RpoE-regulated lipoprotein. | 0.574 |
yfeK | ygiM | b2419 | b3055 | Uncharacterized protein. | SH3 domain protein. | 0.888 |
yfeX | yfeY | b2431 | b2432 | Porphyrinogen oxidase, cytoplasmic; Has both general peroxidase activity and dye-decolorizing activity. Can catalyze the oxidation of both protoporphyrinogen IX and coproporphyrinogen III to their corresponding porphyrins. Also efficiently decolorizes the dyes alizarin red and Cibacron blue F3GA. | RpoE-regulated lipoprotein. | 0.598 |
yfeX | yfeZ | b2431 | b2433 | Porphyrinogen oxidase, cytoplasmic; Has both general peroxidase activity and dye-decolorizing activity. Can catalyze the oxidation of both protoporphyrinogen IX and coproporphyrinogen III to their corresponding porphyrins. Also efficiently decolorizes the dyes alizarin red and Cibacron blue F3GA. | Inner membrane protein. | 0.506 |
yfeX | ypeA | b2431 | b2434 | Porphyrinogen oxidase, cytoplasmic; Has both general peroxidase activity and dye-decolorizing activity. Can catalyze the oxidation of both protoporphyrinogen IX and coproporphyrinogen III to their corresponding porphyrins. Also efficiently decolorizes the dyes alizarin red and Cibacron blue F3GA. | GNAT family putative N-acetyltransferase; Belongs to the acetyltransferase family. YpeA subfamily. | 0.421 |
yfeY | blc | b2432 | b4149 | RpoE-regulated lipoprotein. | Outer membrane lipoprotein cell division and growth lipocalin; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids; Belongs to the calycin superfamily. Lipocalin family. | 0.456 |
yfeY | sixA | b2432 | b2340 | RpoE-regulated lipoprotein. | Phosphohistidine phosphatase; Exhibits phosphohistidine phosphatase activity towards the HPt domain of the ArcB sensor involved in the multistep His-Asp phosphorelay. | 0.481 |
yfeY | yaiW | b2432 | b0378 | RpoE-regulated lipoprotein. | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | 0.540 |
yfeY | yfeK | b2432 | b2419 | RpoE-regulated lipoprotein. | Uncharacterized protein. | 0.574 |
yfeY | yfeX | b2432 | b2431 | RpoE-regulated lipoprotein. | Porphyrinogen oxidase, cytoplasmic; Has both general peroxidase activity and dye-decolorizing activity. Can catalyze the oxidation of both protoporphyrinogen IX and coproporphyrinogen III to their corresponding porphyrins. Also efficiently decolorizes the dyes alizarin red and Cibacron blue F3GA. | 0.598 |
yfeY | yfeZ | b2432 | b2433 | RpoE-regulated lipoprotein. | Inner membrane protein. | 0.622 |
yfeY | ygdI | b2432 | b2809 | RpoE-regulated lipoprotein. | DUF903 family verified lipoprotein. | 0.459 |
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