STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbUPutative regulator; Negative regulator of allantoin and glyoxylate utilization operons. Binds to the gcl promoter and to the allS-allA intergenic region (By similarity). (271 aa)    
Predicted Functional Partners:
ybbT
Orf, hypothetical protein; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the anaerobic utilization of allantoin as sole nitrogen source. Reinforces the induction of genes involved in the degradation of allantoin and glyoxylate by producing glyoxylate.
     
 0.799
ybbS
Putative transcriptional regulator LYSR-type; Positive regulator essential for the expression of AllD operon. Binds to the AllD promoter (By similarity).
  
  
 0.749
gcl
Glyoxylate carboligase; Catalyzes the condensation of two molecules of glyoxylate to give 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde). Belongs to the TPP enzyme family.
 
   
 0.727
mhpR
Transcriptional regulator for mhp operon; Residues 1 to 290 of 290 are 98.62 pct identical to residues 26 to 315 of 315 from Escherichia coli K-12 Strain MG1655: B0346.
  
     0.538
ybgJ
Putative carboxylase; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.527
gip
Glyoxylate-induced protein; Residues 1 to 258 of 258 are 99.22 pct identical to residues 1 to 258 of 258 from Escherichia coli K-12 Strain MG1655: B0508; Belongs to the hyi family.
       0.522
ybgK
Putative carboxylase; Residues 1 to 310 of 310 are 99.03 pct identical to residues 1 to 310 of 310 from Escherichia coli K-12 Strain MG1655: B0712.
  
    0.509
ybbQ
Putative oxidoreductase; Residues 1 to 292 of 292 are 98.97 pct identical to residues 1 to 292 of 292 from Escherichia coli K-12 Strain MG1655: B0509.
 
     0.508
ydfH
Orf, hypothetical protein; Residues 1 to 228 of 228 are 100.00 pct identical to residues 1 to 228 of 228 from Escherichia coli K-12 Strain MG1655: B1540.
  
    0.484
mcbR
Orf, hypothetical protein; Residues 1 to 240 of 240 are 99.58 pct identical to residues 1 to 240 of 240 from Escherichia coli K-12 Strain MG1655: B1450.
  
    0.466
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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