STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdSPutative outer membrane protein; Exports the biofilm adhesin polysaccharide poly-beta-1,6-N- acetyl-D-glucosamine (PGA) across the outer membrane. The PGA transported seems to be partially N-deacetylated since N-deacetylation of PGA by PgaB is needed for PGA export through the PgaA porin (By similarity). (807 aa)    
Predicted Functional Partners:
ycdQ
Orf, hypothetical protein; Probable N-acetylglucosaminyltransferase that catalyzes the polymerization of single monomer units of UDP-N-acetylglucosamine to produce the linear homopolymer poly-beta-1,6-N-acetyl-D-glucosamine (PGA), a biofilm adhesin polysaccharide; Belongs to the glycosyltransferase 2 family.
 
   
 0.988
ycdR
Orf, hypothetical protein; Catalyzes the N-deacetylation of poly-beta-1,6-N-acetyl-D- glucosamine (PGA), a biofilm adhesin polysaccharide. N-deacetylation promotes PGA export through the PgaA porin (By similarity).
 
  
 0.952
ycdP
Orf, hypothetical protein; Required for the synthesis of poly-beta-1,6-N-acetyl-D- glucosamine (PGA), a biofilm adhesin polysaccharide. May assist the glycosyltransferase PgaC in the polymerization of PGA (By similarity).
     
 0.857
ypjA
Putative ATP-binding component of a transport system; Residues 1 to 1528 of 1528 are 97.44 pct identical to residues 44 to 1569 of 1569 from Escherichia coli K-12 Strain MG1655: B2647.
  
   0.814
csrA
Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).
      
 0.796
yfaL
Putative ATP-binding component of a transport system; Residues 1 to 1250 of 1250 are 95.84 pct identical to residues 1 to 1250 of 1250 from Escherichia coli K-12 Strain MG1655: B2233.
  
   
 0.774
yahE
Orf, hypothetical protein; Residues 1 to 287 of 287 are 97.90 pct identical to residues 1 to 287 of 287 from Escherichia coli K-12 Strain MG1655: B0319.
  
     0.770
Z3135
Putative invasin; Residues 794 to 2660 of 2660 are 71.80 pct identical to residues 504 to 2383 of 2383 from Escherichia coli K-12 Strain MG1655: B1978; Belongs to the intimin/invasin family.
  
     0.766
yraH
Putative fimbrial-like protein; Residues 1 to 194 of 194 are 94.32 pct identical to residues 1 to 194 of 194 from Escherichia coli K-12 Strain MG1655: B3142.
  
     0.763
recE
Putative exodeoxyribonuclease VIII of prophage CP-933R; Residues 1 to 866 of 866 are 99.19 pct identical to residues 1 to 866 of 866 from Escherichia coli K-12 Strain MG1655: B1350.
  
     0.760
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.