STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypfNHypothetical protein; Residues 1 to 66 of 66 are 100.00 pct identical to residues 1 to 66 of 66 from GenPept 118 : gi|1799901|dbj|BAA16351.1| (D90876) similar to [PIR Accession Number D42959] [Escherichia coli]. (66 aa)    
Predicted Functional Partners:
yfhB
Orf, hypothetical protein; Residues 1 to 190 of 190 are 99.47 pct identical to residues 1 to 190 of 190 from Escherichia coli K-12 Strain MG1655: B2560.
  
     0.774
yggN
Orf, hypothetical protein; Residues 1 to 239 of 239 are 99.58 pct identical to residues 1 to 239 of 239 from Escherichia coli K-12 Strain MG1655: B2958.
  
     0.773
ygaC
Orf, hypothetical protein; Residues 1 to 114 of 114 are 100.00 pct identical to residues 1 to 114 of 114 from Escherichia coli K-12 Strain MG1655: B2671.
  
     0.772
yhfK
Orf, hypothetical protein; Residues 1 to 696 of 696 are 100.00 pct identical to residues 1 to 696 of 696 from Escherichia coli K-12 Strain MG1655: B3358.
  
     0.772
yacC
Hypothetical protein; Residues 1 to 156 of 156 are 100.00 pct identical to residues 1 to 156 of 156 from Escherichia coli K-12 Strain MG1655: B0122.
  
     0.771
yiaF
Hypothetical protein; Residues 1 to 276 of 276 are 100.00 pct identical to residues 1 to 276 of 276 from Escherichia coli K-12 Strain MG1655: B3554.
  
     0.770
yniB
Orf, hypothetical protein; Residues 1 to 178 of 178 are 97.75 pct identical to residues 1 to 178 of 178 from Escherichia coli K-12 Strain MG1655: B1726.
  
     0.769
yidQ
Hypothetical protein; Residues 1 to 135 of 135 are 99.25 pct identical to residues 1 to 135 of 135 from Escherichia coli K-12 Strain MG1655: B3688.
  
     0.769
ynfB
Orf, hypothetical protein; Residues 1 to 113 of 113 are 97.34 pct identical to residues 1 to 113 of 113 from Escherichia coli K-12 Strain MG1655: B1583; Belongs to the UPF0482 family.
  
     0.768
ampE
Regulates ampC; Residues 1 to 284 of 284 are 99.64 pct identical to residues 1 to 284 of 284 from Escherichia coli K-12 Strain MG1655: B0111.
  
     0.766
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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