STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECs0210RNase HI; Similar to RNHA_ECOLI gi|1786408 percent identity 100 in 155 aa (Conserved in E.coli K-12). (155 aa)    
Predicted Functional Partners:
ECs0211
DNA polymerase III epsilon subunit; Similar to DNAQ_ECOLI gi|1786409 percent identity 99 in 243 aa (Conserved in E.coli K-12).
 
  
 0.956
ECs0185
RNAse HII; Similar to RNHB_ECOLI gi|1786380 percent identity 99 in 198 aa (Conserved in E.coli K-12).
   
 
 0.924
ECs1846
DNA topoisomerase type I omega protein; Similar to TOPA_ECOLI gi|1787529 percent identity 99 in 865 aa (Conserved in E.coli K-12).
   
 
 0.752
ECs4786
DNA polymerase I; Similar to POLA_ECOLI gi|1790294 percent identity 99 in 928 aa (Conserved in E.coli K-12).
  
 0.730
ECs2573
Holliday junction nuclease; Similar to RUVC_ECOLI gi|1788170 percent identity 100 in 173 aa (Conserved in E.coli K-12).
 
   
 0.699
ECs0437
Pyrroline-5-carboxylate reductase; Similar to PROC_ECOLI gi|1786585 percent identity 99 in 269 aa (Conserved in E.coli K-12).
      0.662
ECs4527
DNA helicase RecG; Similar to RECG_ECOLI gi|2367254 percent identity 99 in 693 aa (Conserved in E.coli K-12).
     
 0.651
ECs4637
Replication initiation protein DnaA; Similar to DNAA_ECOLI gi|2367267 percent identity 99 in 467 aa (Conserved in E.coli K-12).
     
 0.651
ECs5041
ssDNA-binding protein; Similar to SSB_ECOLI gi|1790494 percent identity 100 in 178 aa (Conserved in E.coli K-12).
 
 
 
 0.636
ECs3556
Similar to RECA_ECOLI gi|1789051 percent identity 100 in 353 aa (Conserved in E.coli K-12).
   
 
 0.632
Your Current Organism:
Escherichia coli O157H7 Sakai
NCBI taxonomy Id: 386585
Other names: E. coli O157:H7 str. Sakai, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 strain Sakai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.