STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG39377.1GDPmannose 4,6-dehydratase. (341 aa)    
Predicted Functional Partners:
SDG39339.1
D-glycero-alpha-D-manno-heptose-7-phosphate kinase.
 
   
 0.906
fcl
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  0.906
SDG56347.1
Mannose-1-phosphate guanylyltransferase/mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.902
SDG39304.1
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase.
 
  
 0.897
SDG39274.1
Glycosyl transferase family 2.
     
 0.797
SDG39243.1
Glycosyl transferase family 2.
  
 
  0.722
SDG39172.1
UDP-arabinose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
0.680
SDG76494.1
UDP-N-acetylglucosamine 4,6-dehydratase.
  
  
 0.673
SDG66366.1
O-antigen biosynthesis protein WbqV.
  
  
 0.673
SDG53253.1
NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family.
 
 
0.672
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.