STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG88576.1Hypothetical protein. (256 aa)    
Predicted Functional Partners:
SDG88613.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
 
     0.847
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.802
SDG88683.1
Protease YdgD.
       0.757
SDH47539.1
Hypothetical protein.
  
     0.709
SDG74253.1
ATP-dependent helicase/nuclease subunit B.
  
     0.706
lptD
LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.665
SDH12428.1
DNA polymerase III, chi subunit.
 
     0.628
SDG48873.1
Protein of unknown function.
  
     0.618
SDG94044.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
    0.613
SDG86253.1
Uncharacterized conserved protein, UPF0335 family; Belongs to the UPF0335 family.
  
     0.603
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.