STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG87356.1Helix-turn-helix. (182 aa)    
Predicted Functional Partners:
SDH13484.1
Helix-turn-helix domain-containing protein.
 
 0.896
SDH73235.1
GntR family transcriptional regulator, phosphonate transport system regulatory protein.
  
  
 0.804
SDH29472.1
GNAT-family acetyltransferase TIGR03103.
  
 
 0.768
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.738
cobB-2
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
 
  0.735
SDG39775.1
8-oxo-dGTP diphosphatase.
  
 
  0.725
SDG50123.1
Ribosomal protein S18 acetylase RimI.
  
 
 0.701
SDG74319.1
Ribosomal protein S18 acetylase RimI.
  
 
 0.701
SDG92276.1
Aminoglycoside 3-N-acetyltransferase I.
  
 
 0.701
SDH59084.1
Ribosomal-protein-alanine N-acetyltransferase.
  
 
 0.701
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.