STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH06015.1TRAP transporter, DctM subunit. (429 aa)    
Predicted Functional Partners:
SDH05923.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
 0.995
SDH05962.1
Tripartite ATP-independent transporter, DctQ component.
  
 0.912
SDG78838.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.846
SDG46253.1
C4-dicarboxylate-binding protein DctP.
  
 0.834
SDG46277.1
C4-dicarboxylate transporter, DctQ subunit.
 
 0.819
SDG78803.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.803
SDH65871.1
Acetyltransferase.
  
 
  0.672
SDH06050.1
ABC-2 type transport system ATP-binding protein.
       0.588
SDH06089.1
ABC-2 type transport system permease protein.
       0.588
SDG46311.1
C4-dicarboxylate transporter, DctM subunit.
  
  
 
0.559
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.