STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH27006.1Coenzyme F420-reducing hydrogenase, alpha subunit. (388 aa)    
Predicted Functional Partners:
SDH26976.1
Hydrogenase small subunit.
 
 0.998
SDH26899.1
Ni/Fe-hydrogenase 1 B-type cytochrome subunit.
 
 
 0.994
hypA
Hydrogenase nickel incorporation protein HypA/HybF; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.980
SDH07863.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.972
SDG71682.1
Coenzyme F420-reducing hydrogenase, gamma subunit.
  
 0.963
SDH12742.1
Coenzyme F420 hydrogenase subunit beta.
  
 0.961
SDG94586.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 
 0.915
SDH26939.1
Hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
  0.910
SDH26865.1
Hydrogenase maturation protease.
 
 
 0.894
SDH26799.1
Hydrogenase-1 operon protein HyaF.
 
  
 0.890
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.