STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH45355.1Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (109 aa)    
Predicted Functional Partners:
SDH45401.1
Serine/threonine-protein kinase RsbW/sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 0.999
SDH45447.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 0.999
SDG96884.1
PAS domain S-box-containing protein.
  
 
 0.972
SDG43927.1
PAS domain S-box-containing protein.
  
 
 0.967
SDG53772.1
PAS domain S-box-containing protein.
  
 
 0.967
SDG56188.1
PAS domain S-box-containing protein.
  
 
 0.967
SDH23882.1
PAS domain S-box-containing protein.
  
 
 0.967
SDH45260.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 
  0.965
SDH45311.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 
  0.961
SDH45219.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
  0.940
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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