STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH69290.1Aspartate/methionine/tyrosine aminotransferase. (386 aa)    
Predicted Functional Partners:
SDG55111.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.871
SDH07863.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.865
SDG95533.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.826
SDH39533.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.819
SDH37160.1
Prephenate dehydratase.
 
 
 0.798
SDH61270.1
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.770
SDG75448.1
anthraniloyl-CoA monooxygenase.
   
 
 0.753
SDG70882.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 
 0.738
SDG65788.1
NADPH-dependent glutamate synthase beta chain.
  
 
 0.738
SDG84216.1
NADPH-dependent glutamate synthase beta chain.
  
 
 0.738
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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