STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH67987.1CRISPR system Cascade subunit CasC. (363 aa)    
Predicted Functional Partners:
SDH67958.1
CRISPR system Cascade subunit CasD.
 
 
 0.999
SDH68053.1
CRISPR system Cascade subunit CasA.
 
 
 0.999
SDH68021.1
CRISPR type I-E/ECOLI-associated protein CasB/Cse2.
  
 
 0.995
SDH68084.1
CRISPR-associated endonuclease/helicase Cas3.
 
 
 0.992
SDH67885.1
Hypothetical protein.
 
  
 0.973
SDH67852.1
CRISPR-associated protein Cas2.
 
  
 0.964
SDH67917.1
CRISPR system Cascade subunit CasE.
 
  
 0.961
SDH78934.1
CRISPR-associated endonuclease/helicase Cas3.
 
 
 0.955
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
   
  
 0.456
SDH68115.1
Hypothetical protein.
       0.451
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.