STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH76231.1Type IV secretion system protein VirD4. (469 aa)    
Predicted Functional Partners:
SDH76300.1
Antirestriction protein ArdC.
 
    0.792
SDH76198.1
Hypothetical protein.
       0.773
SDH92967.1
Uncharacterized conserved protein, DUF736 family.
 
     0.758
SDH92893.1
Protein of unknown function.
  
     0.747
SDH90775.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
   
 0.729
SDH10977.1
Hypothetical protein.
   
 
 0.588
SDH51469.1
5-methylcytosine-specific restriction endonuclease McrA.
   
 
 0.588
SDH95206.1
Hypothetical protein.
 
   
 0.585
SDH63730.1
Patatin-like phospholipase.
    
   0.491
topA
DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.462
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.