Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH77506.1 | SDH77548.1 | SAMN05421742_11238 | SAMN05421742_11239 | Hypothetical protein. | Paraquat-inducible protein B. | 0.938 |
SDH77506.1 | SDH77593.1 | SAMN05421742_11238 | SAMN05421742_11240 | Hypothetical protein. | Paraquat-inducible protein A. | 0.942 |
SDH77506.1 | SDH77626.1 | SAMN05421742_11238 | SAMN05421742_11241 | Hypothetical protein. | Paraquat-inducible protein A. | 0.940 |
SDH77506.1 | SDH77664.1 | SAMN05421742_11238 | SAMN05421742_11242 | Hypothetical protein. | F-type H+-transporting ATPase subunit gamma. | 0.441 |
SDH77506.1 | atpF-3 | SAMN05421742_11238 | SAMN05421742_11244 | Hypothetical protein. | F-type H+-transporting ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.520 |
SDH77548.1 | SDH77506.1 | SAMN05421742_11239 | SAMN05421742_11238 | Paraquat-inducible protein B. | Hypothetical protein. | 0.938 |
SDH77548.1 | SDH77593.1 | SAMN05421742_11239 | SAMN05421742_11240 | Paraquat-inducible protein B. | Paraquat-inducible protein A. | 0.966 |
SDH77548.1 | SDH77626.1 | SAMN05421742_11239 | SAMN05421742_11241 | Paraquat-inducible protein B. | Paraquat-inducible protein A. | 0.958 |
SDH77548.1 | SDH77664.1 | SAMN05421742_11239 | SAMN05421742_11242 | Paraquat-inducible protein B. | F-type H+-transporting ATPase subunit gamma. | 0.420 |
SDH77548.1 | atpA-2 | SAMN05421742_11239 | SAMN05421742_11243 | Paraquat-inducible protein B. | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.420 |
SDH77548.1 | atpE-2 | SAMN05421742_11239 | SAMN05421742_11245 | Paraquat-inducible protein B. | F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.420 |
SDH77548.1 | atpF-3 | SAMN05421742_11239 | SAMN05421742_11244 | Paraquat-inducible protein B. | F-type H+-transporting ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.420 |
SDH77593.1 | SDH77506.1 | SAMN05421742_11240 | SAMN05421742_11238 | Paraquat-inducible protein A. | Hypothetical protein. | 0.942 |
SDH77593.1 | SDH77548.1 | SAMN05421742_11240 | SAMN05421742_11239 | Paraquat-inducible protein A. | Paraquat-inducible protein B. | 0.966 |
SDH77593.1 | SDH77626.1 | SAMN05421742_11240 | SAMN05421742_11241 | Paraquat-inducible protein A. | Paraquat-inducible protein A. | 0.985 |
SDH77593.1 | SDH77664.1 | SAMN05421742_11240 | SAMN05421742_11242 | Paraquat-inducible protein A. | F-type H+-transporting ATPase subunit gamma. | 0.420 |
SDH77593.1 | atpA-2 | SAMN05421742_11240 | SAMN05421742_11243 | Paraquat-inducible protein A. | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.420 |
SDH77593.1 | atpE-2 | SAMN05421742_11240 | SAMN05421742_11245 | Paraquat-inducible protein A. | F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.420 |
SDH77593.1 | atpF-3 | SAMN05421742_11240 | SAMN05421742_11244 | Paraquat-inducible protein A. | F-type H+-transporting ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.420 |
SDH77626.1 | SDH77506.1 | SAMN05421742_11241 | SAMN05421742_11238 | Paraquat-inducible protein A. | Hypothetical protein. | 0.940 |
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