STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH76365.1AAA ATPase domain-containing protein. (575 aa)    
Predicted Functional Partners:
SDH76574.1
Type I restriction enzyme, R subunit.
 
     0.950
SDH76503.1
Type I restriction enzyme, S subunit.
 
     0.946
SDH76539.1
Type I restriction enzyme M protein.
 
     0.946
SDH76432.1
Predicted transport protein.
 
     0.836
SDH76608.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
 
     0.813
SDH76333.1
Hypothetical protein.
       0.800
SDH76465.1
Hypothetical protein.
       0.773
SDH76399.1
Protein of unknown function.
       0.773
cas1-2
CRISP-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
    0.458
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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