STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH94865.1Mu transposase, C-terminal. (503 aa)    
Predicted Functional Partners:
SDH94901.1
Hypothetical protein.
 
 
 0.964
SDH90170.1
AAA domain-containing protein.
 
 
 0.898
SDH91852.1
Mu-like prophage major head subunit gpT.
  
    0.812
SDH93678.1
Protein of unknown function.
 
    0.788
SDH75097.1
Mu-like prophage protein gp16.
 
    0.786
SDH91722.1
Mu-like prophage protein gp29.
 
    0.785
SDH94202.1
Protein of unknown function.
 
    0.784
SDH94424.1
Protein of unknown function.
 
    0.784
SDH92192.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.778
SDH91754.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.777
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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