STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH94901.1Hypothetical protein. (318 aa)    
Predicted Functional Partners:
SDH94865.1
Mu transposase, C-terminal.
 
 
 0.964
SDH96668.1
Mu DNA-binding domain-containing protein.
 
 
 0.915
SDH90210.1
Putative transposase.
 
 
 0.906
SDH93678.1
Protein of unknown function.
 
    0.797
SDH94202.1
Protein of unknown function.
 
    0.792
SDH94424.1
Protein of unknown function.
 
    0.792
SDH75097.1
Mu-like prophage protein gp16.
 
    0.788
SDH91722.1
Mu-like prophage protein gp29.
 
    0.776
SDH92192.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.775
SDH91754.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.774
Your Current Organism:
Roseospirillum parvum
NCBI taxonomy Id: 83401
Other names: DSM 12498, R. parvum, Roseospirillum parvum Glaeser and Overmann 2001, strain 930I
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