STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL43636.1PAS/GGDEF domain protein; silverDB:HdN1F63. (708 aa)    
Predicted Functional Partners:
CBL46172.1
Hypothetical protein; silverDB:HdN1F3460.
 
 
0.914
CBL43635.1
GGDEF; silverDB:HdN1F62.
 
 
0.893
CBL43637.1
PAS:GGDEF domain protein; silverDB:HdN1F64.
 
 
 
0.871
CBL43663.1
Predicted histidine kinase; silverDB:HdN1F103.
 
 0.856
CBL46454.1
Response regulator receiver; silverDB:HdN1F3854.
 
 
 0.847
cheY-2
Signal transduction histidine kinase; silverDB:HdN1F4951.
  
 
 0.830
CBL44880.1
Hypothetical protein; silverDB:HdN1F1712.
 
 
 0.806
CBL43633.1
PAS/PAC sensor signal transduction histidine kinase; silverDB:HdN1F60.
   
 
 0.797
CBL46829.1
Conserved hypothetical protein; silverDB:HdN1F4337.
 
 
0.786
CBL43830.1
Hypothetical protein; silverDB:HdN1F335.
 
 
0.776
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.