STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL43858.1Rieske (2Fe-2S) region; silverDB:HdN1F375. (363 aa)    
Predicted Functional Partners:
CBL43841.1
Conserved hypothetical protein; silverDB:HdN1F354.
 
  
 0.977
CBL46321.1
CoA-transferase, alpha subunit; silverDB:HdN1F3674.
 
   
 0.795
bphC1
2,3-dihydroxybiphenyl-1,2-dioxygenase; silverDB:HdN1F3671.
 
   
 0.789
tesB-3
Putative CoA-transferase beta subunit, probably TesB; silverDB:HdN1F3675.
 
   
 0.788
tesI
3-ketosteroid-delta4(5alpha)-dehydrogenase; silverDB:HdN1F2622.
  
   
 0.785
ksi
Steroid delta-isomerase; silverDB:HdN1F372.
 
     0.774
CBL46295.1
Acyl-CoA dehydrogenase; silverDB:HdN1F3637.
  
   
 0.773
CBL43832.1
Oxidoreductase; silverDB:HdN1F338.
 
   
 0.766
CBL46294.1
Short-chain dehydrogenase/reductase SDR; silverDB:HdN1F3635; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.752
CBL46332.1
Predicted acyl-CoA dehydrogenase; silverDB:HdN1F3689.
  
   
 0.750
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.