STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkMAlkane 1-monooxygenase; silverDB:HdN1F532. (423 aa)    
Predicted Functional Partners:
adhC
Zn-dependent alcohol dehydrogenases, class III; silverDB:HdN1F1114; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.905
CBL46268.1
Aldehyde dehydrogenase; silverDB:HdN1F3599; Belongs to the aldehyde dehydrogenase family.
     
 0.901
CBL46783.1
Aldehyde dehydrogenase; silverDB:HdN1F4276; Belongs to the aldehyde dehydrogenase family.
     
 0.901
CBL44056.1
Iron-containing alcohol dehydrogenase; silverDB:HdN1F598.
     
  0.900
CBL45652.1
Predicted iron-containing alcohol dehydrogenase; silverDB:HdN1F2735.
     
  0.900
CBL44003.1
Hypothetical protein; silverDB:HdN1F534.
       0.682
CBL45732.1
Putative flavodoxin oxidoreductase; silverDB:HdN1F2848.
 
  
 0.641
CBL44085.1
Transcriptional regulator; silverDB:HdN1F640.
  
    0.638
rubA
Rubredoxin; silverDB:HdN1F5024.
 
  
 0.620
CBL45733.1
Transcriptional regulator; silverDB:HdN1F2849.
  
    0.599
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.