STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hflCMembrane protease subunit, stomatin/prohibitin homolog; silverDB:HdN1F544. (304 aa)    
Predicted Functional Partners:
CBL44014.1
Protein of unknown function DUF107; silverDB:HdN1F545.
 
  
 0.946
ftsH
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.913
CBL44012.1
Transcriptional regulator, LysR family; silverDB:HdN1F543; Belongs to the LysR transcriptional regulatory family.
  
    0.682
CBL44015.1
Oxidoreductase, short chain dehydrogenase/reductase family; silverDB:HdN1F548.
   
   0.677
CBL44713.1
Rhomboid-like protein; silverDB:HdN1F1477.
   
 0.507
CBL45736.1
Rhomboid-like protein; silverDB:HdN1F2853.
   
 0.493
CBL45531.1
Probable peptidase M16 family protein; silverDB:HdN1F2568.
  
 0.492
nuoCD1
NADH dehydrogenase I, chain CD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 
 0.487
nuoCD2
NADH dehydrogenase I, chain CD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 
 0.487
dapC
Aminotransferase class-I; silverDB:HdN1F542.
   
 
 0.475
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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