STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC3Predicted nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (131 aa)    
Predicted Functional Partners:
vagC
Probable virulence-associated protein; silverDB:HdN1F606.
 
 
 0.942
CBL46724.1
Similar to virulence associated protein VapB; silverDB:HdN1F4198.
 
 
 0.859
CBL44983.1
Similar to virulence associated protein VapB; silverDB:HdN1F1851.
 
 
 0.786
ntrP
Nitrogen regulatory protein; silverDB:HdN1F4161.
 
 
 0.757
CBL44065.1
Hypothetical protein; silverDB:HdN1F608.
       0.451
CBL44066.1
Predicted 4Fe-4S ferredoxin, iron-sulfur binding protein; silverDB:HdN1F609.
       0.451
CBL44062.1
Hypothetical protein; silverDB:HdN1F605.
       0.424
CBL44061.1
Hypothetical protein; silverDB:HdN1F603.
       0.421
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.