STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL44123.1Putative poly(R)-hydroxyalkanoic acid synthase (Pha); silverDB:HdN1F686. (432 aa)    
Predicted Functional Partners:
fadB
Alpha subunit of fatty acid oxidation complex; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
     
 0.931
CBL46623.1
3-hydroxyacyl-CoA dehydrogenase; silverDB:HdN1F4074.
     
 0.931
CBL46953.1
MaoC-like dehydratase; silverDB:HdN1F4486.
 
  
 0.930
CBL44047.1
Putative poly(R)-hydroxyalkanoic acid synthase (Pha); silverDB:HdN1F589.
  
  
 
0.913
murB1
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.560
CBL44765.1
Uncharacterised protein family (UPF0089); silverDB:HdN1F1550.
  
   
 0.516
CBL44729.1
Conserved hypothetical protein; silverDB:HdN1F1499.
  
     0.486
murA1
Similar to UDP-N-acetylglucosamine enolpyruvyl transferase; silverDB:HdN1F684.
       0.470
CBL44124.1
Hypothetical protein; silverDB:HdN1F687; Belongs to the UPF0149 family.
       0.455
CBL46171.1
Hypothetical protein; silverDB:HdN1F3457.
  
     0.450
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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