STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL44176.1Lipopolysaccharide biosynthesis protein; silverDB:HdN1F754. (331 aa)    
Predicted Functional Partners:
CBL44175.1
Polysaccharide biosynthesis protein; silverDB:HdN1F753.
 
 
 0.976
rfaH
Transcriptional activator RfaH; silverDB:HdN1F755.
       0.779
CBL44126.1
Bacterial sugar transferase; silverDB:HdN1F689.
  
  
 0.634
wcaJ
UDP-glucose lipid carrier transferase; silverDB:HdN1F1908.
  
  
 0.634
CBL46100.1
Predicted sugar transferase; silverDB:HdN1F3357.
  
  
 0.634
wza
Polysaccharide export protein; silverDB:HdN1F691.
  
 
 0.577
CBL45021.1
Polysaccharide export protein; silverDB:HdN1F1899.
  
 
 0.577
CBL46098.1
Predicted polysaccharide export protein; silverDB:HdN1F3353.
  
 
 0.577
CBL45736.1
Rhomboid-like protein; silverDB:HdN1F2853.
  
    0.552
CBL47061.1
General secretion pathway protein-related protein, ATPase; silverDB:HdN1F4630.
 
     0.543
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.